miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|268294968|gb|GT471677.1|GT471677 GGGGATAGACCAGTTTTATCAGTCAATAGTTGTGTGTTTTGTGTTTTTACTCATTTTACTGCTTTTAAGTTCAGTTGGTT
CATATGGTCGCTTTTGGTACCAACGAGTGCGAATATGTCCGAATACATCGACTACGGTTGGAGGAATAACGACTTATTCA
GCAAATCGATCAACAAAACCTTCTACAAGAACCTCACTGCAAGTGATAGGGAAGTGGCCATCAAAGCTCTAAGGAACGTG
ATAAAAAGTTGCGGCGACATCGAATTCAAAAATCACATAGAGCAAGATGAGAAGACGCTCCAAAAGTTCCTGTTTGCCCG
AAAGTTTATACTGGAGGACAGTTTTGAGACGCTGAAAAACTTTTACTGGTACAGGAAACGGAATCCGGATATTTTTCGCG
ATTTAAATTTGGACTCTGCTGATGTACGGAAGGCACTAGAAAATGGACTACCAGGTGTACTAAAGGACAAGGACCGAAAG
GGGCGATGTGTGTTACTTTTAACTGCAAACAACTGGGATTGCAGTTACAGCCTGCTAAGCATATACAGGGCGATGTTGGT
ATGTTTGGAACAAGTAACGAACGATTTGCACAATCAAGCCAATGGGGTGGTGGTCATTGTGGATTGGACCGAGTTTTCGT
ATAAACAAACGTCCCATTTGAAACCTTCAATTTTAAGACTGATGATCGAAGGACTGCAGGATTGTTTTCCAGTTCGATTT
AAAGGCATTCATTTCATTGGCCAGCCATGGTATGTGGATGCGGCTTTAACAGTAATA




Most similar to sp|Q5M7E1|CLVS1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2
           SV=1
          Length = 332

 Score =  167 bits (424), Expect = 6e-41
 Identities = 86/187 (45%), Positives = 124/187 (66%), Gaps = 1/187 (0%)
 Frame = +1

Query: 220 IKALRNVIKSCGDIEFKNHIEQDEKTLQKFLFARKFILEDSFETLKNFYWYRKRNPDIFR 399
           I+ +R++I +  DI F   +  D+  + +FL ARKF   ++F  L  ++ YR+ N D+F+
Sbjct: 31  IQQVRDMIITRPDIGF---LRTDDAFILRFLRARKFNQMEAFRLLAQYFQYRQLNLDMFK 87

Query: 400 DLNLDSADVRKALENGLPGVLKDKDRKGRCVLLLTANNWDCSY-SLLSIYRAMLVCLEQV 576
           +L  D   +++AL +G PGVL+++D  GR +LLL A NWD S  S + I RA+L+ LE +
Sbjct: 88  NLKADDPGIKRALMDGFPGVLENRDHYGRKILLLFAANWDQSRNSFVDILRAILLSLEVL 147

Query: 577 TNDLHNQANGVVVIVDWTEFSYKQTSHLKPSILRLMIEGLQDCFPVRFKGIHFIGQPWYV 756
             D   Q NG ++I+DW+ FS+KQ S L PSILRL IEGLQD FP RF G+HF+ QPWY+
Sbjct: 148 IEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEGLQDSFPARFGGVHFVNQPWYI 207

Query: 757 DAALTVI 777
            A  T+I
Sbjct: 208 HALYTII 214